Articles By Keyword

. "A hybrid Bayesian hierarchical model combining cohort and case-control studies for meta-analysis of diagnostic tests: Accounting for partial verification bias.." Stat Methods Med Res. 2016;25(6):3015-3037. Pub Med
. "A genome-wide association study identifies novel loci for paclitaxel-induced sensory peripheral neuropathy in CALGB 40101.." Clin Cancer Res. 2012;18(18):5099-109. Pub Med
. "Alignment and mapping methodology influence transcript abundance estimation.." Genome Biol. 2020;21(1):239. Pub Med
. "MASS: Meta-analysis of score statistics for sequencing studies.." Bioinformatics. 2013;29(14):1803-5. Pub Med
. "Global copy number profiling of cancer genomes.." Bioinformatics. 2016;32(6):926-8. Pub Med
. "Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny.." Bioinformatics. 2018;34(12):2126-2128. Pub Med
. "DiNAMIC: A method to identify recurrent DNA copy number aberrations in tumors.." Bioinformatics. 2011;27(5):678-85. Pub Med
. "Improved detection of epigenomic marks with mixed effects hidden Markov models.." Biometrics. 2019;75(4):1401-1413. Pub Med
. "SCOPE: A normalization and copy-number estimation method for single-cell DNA sequencing.." Cell Syst. 2020;10(5):445-452.e6. Pub Med
. "A general framework for integrative analysis of incomplete multiomics data.." Genet Epidemiol. 2020;44(7):646-664. Pub Med
. "Meta-analysis of sequencing studies with heterogeneous genetic associations.." Genet Epidemiol. 2014;38(5):389-401. Pub Med
. "SynthEx: a synthetic-normal-based DNA sequencing tool for copy number alteration detection and tumor heterogeneity profiling.." Genome Biol. 2017;18(1):66. Pub Med
. "Single-nucleotide resolution analysis of nucleotide excision repair of ribosomal DNA in humans and mice.." J Biol Chem. 2019;294(1):210-217. Pub Med
. "Allele-specific copy-number discovery from whole-genome and whole-exome sequencing.." Nucleic Acids Res. 2015;43(14):e90. Pub Med
. "Identifying individual risk rare variants using protein structure guided local tests (POINT).." PLoS Comput Biol. 2019;15(2):e1006722. Pub Med
. "Quantitative trait analysis in sequencing studies under trait-dependent sampling.." Proc Natl Acad Sci U S A. 2013;110(30):12247-52. Pub Med
. "Integrative gene set analysis of multi-platform data with sample heterogeneity.." Bioinformatics. 2014;30(11):1501-7. Pub Med
. "SAFE-clustering: Single-cell Aggregated (From Ensemble) clustering for single-cell RNA-seq data.." Bioinformatics. 2019;35(8):1269-1277. Pub Med
. "Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences.." Bioinformatics. 2019;35(12):2084-2092. Pub Med
. "Swimming downstream: Statistical analysis of differential transcript usage following Salmon quantification.." F1000Res. 2018;7():952. Pub Med
. "A general framework for integrative analysis of incomplete multiomics data.." Genet Epidemiol. 2020;44(7):646-664. Pub Med
. "Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications.." Genome Biol. 2018;19(1):24. Pub Med
. "Alignment and mapping methodology influence transcript abundance estimation.." Genome Biol. 2020;21(1):239. Pub Med
. "Differential damage and repair of DNA-adducts induced by anti-cancer drug cisplatin across mouse organs.." Nat Commun. 2019;10(1):309. Pub Med
. "Impact of sex and gonadal steroids on neonatal brain structure.." Cereb Cortex. 2014;24(10):2721-31. Pub Med
. "Sex differences in grey matter atrophy patterns among AD and aMCI patients: results from ADNI.." Neuroimage. 2011;56(3):890-906. Pub Med
. "FADTTS: Functional analysis of diffusion tensor tract statistics.." Neuroimage. 2011;56(3):1412-25. Pub Med
. "Inference on phenotype-specific effects of genes using multivariate kernel machine regression.." Genet Epidemiol. 2018;42(1):64-79. Pub Med
. "Enrollment trends and disparity among patients with lung cancer in national clinical trials, 1990 to 2012.." J Clin Oncol. 2016;34(33):3992-3999. Pub Med
. "Clinical prognostic model for older patients with advanced non-small cell lung cancer.." J Geriatr Oncol. 2019;10(4):555-559. Pub Med
. "A new Bayesian joint model for longitudinal count data with many zeros, intermittent missingness, and dropout with applications to HIV prevention trials.." Stat Med. 2019;38(30):5565-5586. Pub Med
. "Block-diagonal discriminant analysis and its bias-corrected rules.." Stat Appl Genet Mol Biol. 2013;12(3):347-59. Pub Med
. "Regression analysis for secondary response variable in a case-cohort study.." Biometrics. 2018;74(3):1014-1022. Pub Med
. "Confident difference criterion: a new Bayesian differentially expressed gene selection algorithm with applications.." BMC Bioinformatics. 2015;16():245. Pub Med
. "Age and African-American race impact the validity and reliability of the asthma control test in persistent asthmatics.." Respir Res. 2018;19(1):152. Pub Med
. "SAFE-clustering: Single-cell Aggregated (From Ensemble) clustering for single-cell RNA-seq data.." Bioinformatics. 2019;35(8):1269-1277. Pub Med
. "SCOPE: A normalization and copy-number estimation method for single-cell DNA sequencing.." Cell Syst. 2020;10(5):445-452.e6. Pub Med
. "Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications.." Genome Biol. 2018;19(1):24. Pub Med
. "Single cell analysis reveals distinct immune landscapes in transplant and primary sarcomas that determine response or resistance to immunotherapy.." Nat Commun. 2020;11(1):6410. Pub Med
. "Component-wise gradient boosting and false discovery control in survival analysis with high-dimensional covariates.." Bioinformatics. 2016;32(1):50-7. Pub Med
. "Bayesian methods in clinical trials: A Bayesian analysis of ECOG trials E1684 and E1690.." BMC Med Res Methodol. 2012;12():183. Pub Med
. "A composite likelihood method for bivariate meta-analysis in diagnostic systematic reviews.." Stat Methods Med Res. 2017;26(2):914-930. Pub Med
. "Multitrial evaluation of progression-free survival as a surrogate end point for overall survival in first-line extensive-stage small-cell lung cancer.." J Thorac Oncol. 2015;10(7):1099-106. Pub Med
. "Predicting risk of chemotherapy-induced severe neutropenia: A pooled analysis in individual patients data with advanced lung cancer.." Lung Cancer. 2020;141():14-20. Pub Med
. "A general framework for studying genetic effects and gene-environment interactions with missing data.." Biostatistics. 2010;11(4):583-98. Pub Med
. "Latent class model characterization of neighborhood socioeconomic status.." Cancer Causes Control. 2016;27(3):445-52. Pub Med
. "Spatial regression with covariate measurement error: A semiparametric approach.." Biometrics. 2016;72(3):678-86. Pub Med
. "Enrollment trends and disparity among patients with lung cancer in national clinical trials, 1990 to 2012.." J Clin Oncol. 2016;34(33):3992-3999. Pub Med
. "Meta-analysis for discovering rare-variant associations: Statistical methods and software programs.." Am J Hum Genet. 2015;97(1):35-53. Pub Med
. "Meta-analysis of gene-level associations for rare variants based on single-variant statistics.." Am J Hum Genet. 2013;93(2):236-48. Pub Med